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SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences.
SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences.
SILVA maintains a taxonomic resource for the SSU and LSU rRNA sequences of Bacteria, Archaea and Eukarya that are gathered from public nucleic acid sequence repositories. The SILVA.
Starting with SILVA release 111, extensive care has been taken to also improve the eukaryotic taxonomy. From SILVA release 138 on, the Genome Taxonomy Database (GTDB) and UniEuk.
Understanding the Context
Manual Documentation Current Release Classifiers Background Ref NR FAQs SILVA taxonomy ARB support
Download high-quality, regularly updated ribosomal RNA sequence datasets for Bacteria, Archaea, and Eukarya from the official SILVA database.
Evaluation of primer pairs using TestPrime 1.0 TestPrime allows you to evaluate the performance of primer pairs by running an in silico PCR on the SILVA databases. From the results of the PCR,.
Release Tools Download Projects Listing / DADA2 / 1.36.0 / SSU / Filename Filesize Last modification .. LICENSE.txt 449 B 2024-03-14 14:45:08 -08-27 17:14:49.
Key Insights
The SILVA Probe Match and Evaluation Tool - TestProbe 3.0 - detects and displays all occurrences of a given probe or primer sequence in the SILVA datasets. Probe and Primer coverages can be.
To find related sequences (sequence based search) you have to submit your sequence for Alignment (SINA) and enable "Search and Classify".
SILVA ACT consists of three services: SINA Aligner SINA (v1.2.12) will align your rRNA gene sequences accoding to the global SILVA alignment for rRNA genes. The results can be combined with any other.
